Not sure if anyone has any better suggestions but heres a quick idea that might help others get on with running a flat panel monitor and the oqo panel.
My problem is that when I use the docking station I am not interested in looking at the oqo panel. I have a flat panel capable of 1280x1024 so to permanently be stuck with 800x480 seemed a waste.
I therefore created an xorg.conf for both the flat panel (1280x1024) and for the oqo panel. When I run the flat panel version the oqo screen is all messed up since the refresh rate and res is way too high. using the fn + br down button combo you can switch off the back light.
I'm sure there must be a way to turn off the oqo screen and leave the monitor on?
"xset dpms force off" - turns of both screens (slightly annoying)
My linux programming skills are lame and therefore I could think of a way to script a prompt to load a config based on what screen you want to use. Instead I did create two scripts to copy the xorg.conf script based on what screen I want to use e.g. select_panel (script in /sbin/) would copy over the xorg.conf for the oqo panel and then restart gdm (applying the new conf file). select_lcd did the same but with the external monitor active.
I then changed the name of shutdown to sshutdown and create a script "shutdown" in /sbin to copy the oqo panel settings to xorg.conf and then shutdown the machine. This ensured that it always booted in "panel mode".
Its all pretty much cludge but at least I can change between screens pretty easily. Of course if via have released drivers that would allow for two screens that would be even perfect LOL.
Interested to know if RandR works or if anyone else has a better method? Ideally without having to restart x each time you change the setting.
Any ideas?

O.